byarielm.fyi / scImmuCC
Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm. Fork for large datasets with QOL improvements.
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README.md
··· 1 - # sc-ImmuCC 2 - Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm. 1 + # sc-ImmuCC: Hierarchical annotation for immune cell types in single-cell RNA-Seq 3 2 4 3 The below demonstrates the result of Hierarchical annotation for some immune cells in the E-MTAB-11536 dataset (included in the package) 5 4 <div style="backgroud-color: #f5f5f5; padding: 10px"> ··· 13 12 test <- scImmuCC_Layered(count = count ,Non_Immune = FALSE) 14 13 15 14 </div> 15 + 16 + #In 17 + 18 +