mpadge.tngl.sh
Distances on Directed Graphs in R
1#pragma once
2
3#include <memory>
4#include <vector>
5#include <algorithm> // std::fill, std::reverse
6#include <iostream>
7#include <fstream>
8
9#include <Rcpp.h>
10// [[Rcpp::plugins(cpp11)]]
11// [[Rcpp::depends(RcppParallel,RcppThread)]]
12#include <RcppThread.h>
13#include <RcppParallel.h>
14
15#include "pathfinders.h"
16
17class DGraph;
18class PathFinder;
19
20//----------------------------
21//----- functions in flows.cpp
22//----------------------------
23
24Rcpp::NumericVector rcpp_flows_aggregate_par (const Rcpp::DataFrame graph,
25 const Rcpp::DataFrame vert_map_in,
26 Rcpp::IntegerVector fromi,
27 Rcpp::IntegerVector toi_in,
28 Rcpp::NumericMatrix flows,
29 const bool norm_sums,
30 const double tol,
31 const std::string heap_type);
32
33Rcpp::NumericVector rcpp_flows_aggregate_pairwise (const Rcpp::DataFrame graph,
34 const Rcpp::DataFrame vert_map_in,
35 Rcpp::IntegerVector fromi,
36 Rcpp::IntegerVector toi,
37 Rcpp::NumericVector flows,
38 const bool norm_sums,
39 const double tol,
40 const std::string heap_type);
41
42Rcpp::NumericVector rcpp_flows_disperse_par (const Rcpp::DataFrame graph,
43 const Rcpp::DataFrame vert_map_in,
44 Rcpp::IntegerVector fromi,
45 Rcpp::NumericVector k,
46 Rcpp::NumericVector dens,
47 const double &tol,
48 std::string heap_type);
49
50Rcpp::NumericVector rcpp_flows_si (const Rcpp::DataFrame graph,
51 const Rcpp::DataFrame vert_map_in,
52 Rcpp::IntegerVector fromi,
53 Rcpp::IntegerVector toi_in,
54 Rcpp::NumericVector kvec,
55 Rcpp::NumericVector dens_from,
56 Rcpp::NumericVector dens_to,
57 const bool norm_sums,
58 const double tol,
59 const std::string heap_type);